- Locus Technology, Inc - Colony management, supports creation and tracking of research animals: transgenic and congenic lines, knockouts and outbred strains.
- The BioCatalog - Software directory of general interest in molecular biology and genetics.
- MuStaR Sequence Variant Database Software - Designed to create a database of mutation loci, to make this information available to as many people as possible.
- TagSorter - Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences.
- PopGen - Software that models population genetics with emphasis on genetic drift, selection, and migration.
- Progeny Software - Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
- DRIFT - Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
- Genetic Network Maps as Java Applets - Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
- Hands on Genetics - Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Download WIN and MAC demos and order online.
- Advanced Genetics Wizard - Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes.
- Genetics Software - RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis - from Penn State University.
- Big Bench Software - Database application for transgenic mouse colonies. Built-in networking capabilites, for both Mac and PC. Downloadable demo version.
- Alice Software - Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
- STRand - Open-source program to automate or speed up the analysis of DNA fragment length polymorphism samples run on fluorescence based gels . Instructions for use and program download available .
- Genetic Linkage Analysis - Offers links and other resources for genetic analysis software from The Rockefeller University.
- GeneticStudio - A complete suite of population genetic analysis programs for MAC. Includes plug-in modules.
- PowerSSR - Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows and Linux.
- The Darwin Manual - Guide and list of commands used to run this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
- Statistical Genetics Software - Collection of primarily Fortan programs for genetic analysis. Requires registration to download.
- High Performance Computing and Informatics Office - US National Institutes of Health site with extensive genetic linkage analysis application resources on high performance computer systems. Formerly the Computational Methods and Algorithms Group.
- CircuSoft Instrumentation LLC - Transgenic mouse colony tracking and management software for Mac or Windows. Includes demo software and manuals.
- Pegasys - Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
- GENtle, - Application for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
- GeneX Virginia - Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
- MapMakerDrawer - Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
- GeneSifter - Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.
- R/qtl: A QTL Mapping Environment - Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
- LAMS - Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
- Genetic Analysis Software - Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
- MapPop - Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version, documentation and references are available here.
- Broad Institute: Genome Sequence, Maps and Annotations - Genetic code databases for mammals, humans, mice, dogs, chimpanzees, opossums, vertebrate, and invertebrate animals. Also, has links to related resource sites.
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